sudo.bio
Install MCP

Give your agent the tools behind this page. Needs bio on your machine — how to get it.

Cursorone click 
claude mcp add sudo.bio -- bio mcp
{
  "mcpServers": {
    "sudo.bio": {
      "command": "bio",
      "args": [
        "mcp"
      ]
    }
  }
}

lacz-knockout-k12

main marker-cured current branch — new commits land here
main marker-cured 2e125e25 Initial record: wild-type base strain 7c7082e1 lacZ knockout via lambda-Red recombineering 18fa6469 FLP excision of kanR cassette c003c49e P_tet-sfGFP integrated at attB neutral site 583864a1 qPCR: 3 of 8 clones positive

Commit history (all branches, newest first)

Observations recorded: 1 success — failures are kept permanently, not discarded.

CommitBranchMessageGenotype / observationAuthorTime
583864a1 main success qPCR: 3 of 8 clones positive QuantStudio 5 · pasted_export t.meany 2026-10-29 11:08 UTC
c003c49e main P_tet-sfGFP integrated at attB neutral site dlacZ::kanR, attB::P_tet-sfGFP l.hobbs 2026-10-29 09:40 UTC
18fa6469 marker-cured FLP excision of kanR cassette dlacZ (scar) t.meany 2026-10-29 09:40 UTC
7c7082e1 main lacZ knockout via lambda-Red recombineering dlacZ::kanR t.meany 2026-10-29 09:40 UTC
2e125e25 main Initial record: wild-type base strain F- lambda- ilvG- rfb-50 rph-1 l.hobbs 2026-10-29 09:40 UTC

No edit or delete controls exist by design — records are append-only, enforced by the git backend itself. An observation never overwrites a record; it is appended as its own commit.

New commit on “marker-cured”

Blank fields inherit from the branch head, so a commit records only what changed.

Branch from any commit

Branches model alternate engineering directions — e.g. a marker-cured line diverging from a knockout.

Record a result on “marker-cured”

Paste is a first-class input: an instrument you can only export from is still fully recordable. capture_source records how strong the evidence is — read from the instrument, pasted from its export, or asserted by a human.

Field-by-field diff

Pick two commits to compare — changed fields are highlighted.

Provenance

Every commit page shows its DNA barcode. Got a sequenced read instead? Trace it back to a commit and its full history.